Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THYM rs758971 chr9:129175790 A/G 1.62E-5 115 35.67 56.62 28.88 KM Plot
THYM rs75926563 chr9:98515897 T/C 3.35E-9 119 40.67 42.73 34.87 KM Plot
THYM rs75931210 chr2:80540462 T/C 1.63E-6 114 42.9 36.4 9.72 KM Plot
THYM rs75937046 chr4:12567937 CA/C 1.01E-6 118 38.23 57.27 12.78 KM Plot
THYM rs7594021 chr2:215840829 A/G 4.08E-5 119 41.7 42.33 25.1 KM Plot
THYM rs7597579 chr2:30835940 C/T 1.33E-8 119 36.4 50.1 33.13 KM Plot
THYM rs75992680 chr4:115584146 T/C 0 118 38.33 44.58 4.13 KM Plot
THYM rs76033658 chr4:70091668 A/C 4.7E-13 119 41.77 35 6 KM Plot
THYM rs7603834 chr2:30779829 G/T 1.33E-8 119 36.4 50.1 33.13 KM Plot
THYM rs7603947 chr2:30779894 G/A 1.33E-8 119 36.4 50.1 33.13 KM Plot
THYM rs7605131 chr2:30758194 A/G 1.33E-8 119 36.4 50.1 33.13 KM Plot
THYM rs76071278 chr3:122508275 T/A 3.56E-7 118 42.73 36.98 28.43 KM Plot
THYM rs76143072 chr4:70070912 A/G 5.73E-13 118 39.75 49.6 6 KM Plot
THYM rs76144662 chr4:70043214 G/A 7.82E-13 117 39.75 42.3 6 KM Plot
THYM rs76147709 chr4:115571823 A/G 0 119 38.33 46.27 4.13 KM Plot